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Slin_3040 protein (Spirosoma linguale) - STRING interaction network
"Slin_3040" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3040TonB-dependent receptor plug (1107 aa)    
Predicted Functional Partners:
Slin_3039
Hypothetical protein (534 aa)
 
          0.961
Slin_1165
Hypothetical protein (499 aa)
 
 
      0.801
Slin_4811
Hypothetical protein (510 aa)
 
          0.782
Slin_3947
Hypothetical protein (514 aa)
 
          0.780
Slin_0440
RagB/SusD domain-containing protein (561 aa)
   
          0.771
Slin_3035
Hypothetical protein (533 aa)
   
          0.765
Slin_1168
Hypothetical protein (481 aa)
 
          0.762
Slin_6612
Hypothetical protein (546 aa)
 
          0.760
Slin_3961
Hypothetical protein (520 aa)
 
          0.751
Slin_1424
RagB/SusD domain-containing protein (604 aa)
   
          0.738
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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