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Slin_3070 protein (Spirosoma linguale) - STRING interaction network
"Slin_3070" - beta-Ig-H3/fasciclin in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3070beta-Ig-H3/fasciclin (354 aa)    
Predicted Functional Partners:
Slin_4432
beta-Ig-H3/fasciclin (318 aa)
 
          0.780
Slin_3071
ECF subfamily RNA polymerase sigma-24 subunit (184 aa)
 
          0.719
Slin_6240
Na+/H+ antiporter (537 aa)
     
 
    0.643
Slin_5804
Sodium/hydrogen exchanger (418 aa)
     
 
    0.643
Slin_1844
Sodium/hydrogen exchanger (410 aa)
     
 
    0.643
Slin_0211
Na+/H+ antiporter (533 aa)
     
 
    0.643
Slin_3069
Aldehyde dehydrogenase (508 aa)
   
        0.636
Slin_3072
anti-sigma-K factor RskA (274 aa)
              0.512
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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