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Slin_3072 protein (Spirosoma linguale) - STRING interaction network
"Slin_3072" - anti-sigma-K factor RskA in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3072anti-sigma-K factor RskA (274 aa)    
Predicted Functional Partners:
Slin_3071
ECF subfamily RNA polymerase sigma-24 subunit (184 aa)
 
          0.931
Slin_4001
ECF subfamily RNA polymerase sigma-24 subunit (213 aa)
   
          0.704
Slin_4516
Hypothetical protein (278 aa)
   
          0.695
Slin_2811
Hypothetical protein (266 aa)
   
          0.691
Slin_5555
Hypothetical protein (269 aa)
   
          0.682
Slin_4517
Hypothetical protein (247 aa)
   
          0.677
Slin_2810
Hypothetical protein (239 aa)
   
          0.674
Slin_0742
LmbE family protein (882 aa)
   
          0.661
Slin_5556
Hypothetical protein (243 aa)
   
          0.654
Slin_2813
Metal dependent phosphohydrolase (414 aa)
   
          0.641
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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