STRINGSTRING
Slin_3075 protein (Spirosoma linguale) - STRING interaction network
"Slin_3075" - Alpha/beta hydrolase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3075Alpha/beta hydrolase (328 aa)    
Predicted Functional Partners:
Slin_6485
Peptidase C1A papain (494 aa)
   
          0.646
Slin_2513
Hypothetical protein (158 aa)
   
          0.627
Slin_2517
YHS domain-containing protein (181 aa)
   
          0.589
Slin_2511
YHS domain-containing protein (150 aa)
   
          0.564
Slin_2496
Hypothetical protein (371 aa)
   
          0.546
Slin_6134
Hypothetical protein (187 aa)
   
          0.519
Slin_3074
Glycosyl transferase family protein (854 aa)
              0.459
Slin_3443
Hypothetical protein (952 aa)
   
          0.454
Slin_1852
Flavin-containing monooxygenase FMO (378 aa)
   
          0.431
Slin_5485
Cytochrome C class I (561 aa)
   
          0.416
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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