STRINGSTRING
Slin_3096 protein (Spirosoma linguale) - STRING interaction network
"Slin_3096" - Phage transcriptional regulator AlpA in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3096Phage transcriptional regulator AlpA (100 aa)    
Predicted Functional Partners:
Slin_3280
Excisionase family DNA binding domain-containing protein (185 aa)
   
          0.738
Slin_3097
Hypothetical protein (238 aa)
              0.686
Slin_3095
P4 family phage/plasmid primase (486 aa)
              0.659
Slin_3094
Hypothetical protein (404 aa)
 
          0.603
Slin_5949
Hypothetical protein (1152 aa)
   
          0.572
Slin_1629
Hypothetical protein (354 aa)
   
          0.543
Slin_2648
ADP-ribosylation/crystallin J1 (543 aa)
   
          0.532
Slin_3098
Hypothetical protein (122 aa)
              0.513
Slin_3099
Integrase family protein (441 aa)
              0.492
Slin_2623
Major facilitator superfamily protein (422 aa)
   
          0.481
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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