STRINGSTRING
Slin_3099 protein (Spirosoma linguale) - STRING interaction network
"Slin_3099" - Integrase family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3099Integrase family protein (441 aa)    
Predicted Functional Partners:
Slin_3098
Hypothetical protein (122 aa)
              0.819
Slin_0992
Surface antigen (D15) (875 aa)
   
          0.761
Slin_5251
Hypothetical protein (182 aa)
   
          0.674
Slin_3158
Hypothetical protein (857 aa)
   
          0.673
Slin_5872
Integrase family protein (433 aa)
   
          0.665
Slin_1464
Hypothetical protein (296 aa)
   
          0.658
Slin_2875
Hypothetical protein (843 aa)
   
          0.644
Slin_5927
Hypothetical protein (168 aa)
   
          0.624
Slin_1307
Outer membrane assembly lipoprotein YfiO (299 aa)
   
          0.616
Slin_1528
Hypothetical protein (984 aa)
   
          0.610
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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