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Slin_3121 protein (Spirosoma linguale) - STRING interaction network
"Slin_3121" - TonB-dependent siderophore receptor in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3121TonB-dependent siderophore receptor (809 aa)    
Predicted Functional Partners:
Slin_4534
TonB-dependent receptor (779 aa)
 
   
  0.785
Slin_5756
Propeptide PepSY amd peptidase M4 (388 aa)
 
   
  0.783
Slin_3122
Hypothetical protein (437 aa)
              0.745
Slin_6535
TonB-dependent receptor (694 aa)
 
   
  0.616
Slin_1573
PepSY-associated TM helix domain-containing protein (351 aa)
 
   
  0.612
Slin_0214
Hypothetical protein (389 aa)
   
          0.594
Slin_4555
TonB-dependent receptor (734 aa)
 
   
  0.572
Slin_0202
Hypothetical protein (487 aa)
   
          0.572
Slin_4659
Hypothetical protein (390 aa)
   
          0.568
Slin_0802
Hypothetical protein (538 aa)
   
          0.535
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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