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Slin_3134 protein (Spirosoma linguale) - STRING interaction network
"Slin_3134" - Cytochrome C, class I in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3134Cytochrome C, class I (129 aa)    
Predicted Functional Partners:
Slin_4772
Hypothetical protein (628 aa)
   
          0.776
Slin_1879
Hypothetical protein (629 aa)
   
          0.759
Slin_1880
Blue (type 1) copper domain-containing protein (722 aa)
 
          0.758
Slin_6137
Blue (type 1) copper domain-containing protein (669 aa)
 
          0.754
Slin_6430
alpha-L-rhamnosidase (757 aa)
   
          0.698
Slin_4377
Lipase (238 aa)
   
          0.685
Slin_0335
PKD domain-containing protein (984 aa)
   
          0.634
Slin_4672
PKD domain-containing protein (941 aa)
   
          0.599
Slin_2785
4-amino-4-deoxy-L-arabinose transferase-like protein (502 aa)
   
          0.588
Slin_3133
Type 11 methyltransferase (246 aa)
              0.586
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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