STRINGSTRING
Slin_3138 protein (Spirosoma linguale) - STRING interaction network
"Slin_3138" - Type 11 methyltransferase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3138Type 11 methyltransferase (255 aa)    
Predicted Functional Partners:
Slin_2797
Hypothetical protein (1343 aa)
   
          0.670
Slin_0566
Hypothetical protein (1086 aa)
   
          0.647
Slin_3137
Hypothetical protein (483 aa)
              0.583
Slin_3136
TrmH family RNA methyltransferase (276 aa)
              0.583
Slin_4934
Type 11 methyltransferase (332 aa)
   
          0.573
Slin_5161
Hypothetical protein (428 aa)
   
          0.533
Slin_0526
Hypothetical protein (354 aa)
   
          0.526
Slin_2463
ABC transporter (431 aa)
 
          0.461
Slin_2571
ABC transporter (419 aa)
 
          0.456
Slin_5463
Hypothetical protein (884 aa)
   
          0.414
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (15%) [HD]