STRINGSTRING
Slin_3163 protein (Spirosoma linguale) - STRING interaction network
"Slin_3163" - Nucleotidyltransferase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3163Nucleotidyltransferase (356 aa)    
Predicted Functional Partners:
Slin_1491
Hypothetical protein (368 aa)
 
          0.730
Slin_1093
Hypothetical protein (650 aa)
 
          0.705
rtcB
Hypothetical protein (512 aa)
 
        0.657
Slin_5923
Hypothetical protein (461 aa)
   
          0.628
Slin_4534
TonB-dependent receptor (779 aa)
   
          0.601
kptA
Phosphotransferase KptA/Tpt1; Removes the 2’-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1’’-2’’-cyclic phosphate (APPR>P). May function as an ADP- ribosylase (182 aa)
 
          0.583
Slin_3164
Hypothetical protein (534 aa)
              0.582
Slin_1490
Hypothetical protein (348 aa)
   
          0.565
Slin_3800
Hypothetical protein (515 aa)
   
          0.528
Slin_3162
Hypothetical protein (146 aa)
              0.511
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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