STRINGSTRING
Slin_3169 protein (Spirosoma linguale) - STRING interaction network
"Slin_3169" - TonB-dependent receptor in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3169TonB-dependent receptor (813 aa)    
Predicted Functional Partners:
Slin_6621
Hypothetical protein (2541 aa)
   
          0.753
Slin_1304
Hypothetical protein (301 aa)
   
          0.731
Slin_1298
Hypothetical protein (434 aa)
   
          0.705
Slin_2385
Hypothetical protein (901 aa)
   
          0.698
Slin_0553
TonB-dependent receptor plug (1036 aa)
   
          0.691
Slin_4282
Hypothetical protein (432 aa)
   
          0.680
Slin_5950
Hypothetical protein (400 aa)
   
          0.679
Slin_4879
Hypothetical protein (170 aa)
   
          0.676
Slin_3168
Hypothetical protein (205 aa)
              0.676
Slin_4064
Hypothetical protein (180 aa)
   
          0.666
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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