STRINGSTRING
Slin_3170 protein (Spirosoma linguale) - STRING interaction network
"Slin_3170" - TonB-dependent receptor in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3170TonB-dependent receptor (827 aa)    
Predicted Functional Partners:
Slin_1298
Hypothetical protein (434 aa)
   
          0.743
Slin_2312
Hypothetical protein (526 aa)
   
          0.737
Slin_6621
Hypothetical protein (2541 aa)
   
          0.732
Slin_3583
Hypothetical protein (313 aa)
   
          0.721
Slin_1525
Hypothetical protein (855 aa)
   
          0.709
Slin_1304
Hypothetical protein (301 aa)
   
          0.707
Slin_4879
Hypothetical protein (170 aa)
   
          0.704
Slin_4282
Hypothetical protein (432 aa)
   
          0.698
Slin_2729
TonB-dependent receptor plug (999 aa)
   
          0.698
Slin_2239
Hypothetical protein (333 aa)
   
          0.693
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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