STRINGSTRING
Slin_3233 protein (Spirosoma linguale) - STRING interaction network
"Slin_3233" - Outer membrane efflux protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3233Outer membrane efflux protein (462 aa)    
Predicted Functional Partners:
Slin_1021
RND family efflux transporter MFP subunit (390 aa)
 
          0.725
Slin_5685
Glycosyl transferase-like protein UDP- glucuronosyltransferase (382 aa)
   
          0.691
Slin_3283
Hypothetical protein (121 aa)
   
          0.653
Slin_3234
Amidohydrolase (543 aa)
              0.634
Slin_3232
Hypothetical protein (230 aa)
              0.607
Slin_6568
RagB/SusD domain-containing protein (502 aa)
   
          0.606
Slin_4380
RagB/SusD domain-containing protein (478 aa)
   
          0.605
Slin_2759
AraC family transcriptional regulator (300 aa)
   
          0.586
Slin_4318
RagB/SusD domain-containing protein (481 aa)
   
          0.582
Slin_1020
Acriflavin resistance protein (1037 aa)
 
          0.580
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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