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Slin_3237 protein (Spirosoma linguale) - STRING interaction network
"Slin_3237" - GntR family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3237GntR family transcriptional regulator (365 aa)    
Predicted Functional Partners:
Slin_1805
Sugar (pentulose and hexulose) kinase-like protein (474 aa)
 
          0.736
Slin_2453
RagB/SusD domain-containing protein (540 aa)
 
          0.592
Slin_1885
Hypothetical protein (440 aa)
   
          0.505
Slin_2947
RND family efflux transporter MFP subunit (363 aa)
   
          0.500
Slin_2949
NodT family RND efflux system outer membrane lipoprotein (476 aa)
   
          0.491
Slin_1130
PDZ/DHR/GLGF domain-containing protein (789 aa)
   
          0.428
Slin_1176
Hypothetical protein (120 aa)
   
          0.427
Slin_6388
Hypothetical protein (73 aa)
   
          0.421
Slin_3986
Xylose isomerase (338 aa)
   
          0.416
Slin_0273
RagB/SusD domain-containing protein (582 aa)
   
          0.412
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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