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Slin_3255 protein (Spirosoma linguale) - STRING interaction network
"Slin_3255" - ECF subfamily RNA polymerase sigma-24 subunit in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3255ECF subfamily RNA polymerase sigma-24 subunit (183 aa)    
Predicted Functional Partners:
Slin_3254
Hypothetical protein (62 aa)
              0.850
Slin_3835
Hypothetical protein (137 aa)
   
          0.747
Slin_5680
Hypothetical protein (125 aa)
   
          0.743
Slin_0526
Hypothetical protein (354 aa)
   
          0.726
Slin_0714
Hypothetical protein (109 aa)
   
          0.725
Slin_3265
Hypothetical protein (127 aa)
   
          0.705
Slin_2706
Hypothetical protein (928 aa)
   
          0.689
Slin_2495
Hypothetical protein (204 aa)
   
          0.687
Slin_5852
Hypothetical protein (623 aa)
   
          0.653
Slin_1741
Hypothetical protein (977 aa)
   
          0.652
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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