STRINGSTRING
Slin_3277 protein (Spirosoma linguale) - STRING interaction network
"Slin_3277" - Beta-lactamase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3277Beta-lactamase (253 aa)    
Predicted Functional Partners:
Slin_2830
PHP domain-containing protein (577 aa)
     
      0.980
lipB
Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate (245 aa)
 
   
  0.812
Slin_3276
Response regulator receiver protein (126 aa)
              0.688
Slin_3278
Hypothetical protein (364 aa)
              0.554
Slin_0142
PAS/PAC sensor signal transduction histidine kinase (1178 aa)
 
     
  0.527
Slin_4391
Radical SAM protein (327 aa)
   
   
  0.515
Slin_0858
Radical SAM protein (349 aa)
   
   
  0.515
Slin_0240
Radical SAM protein (340 aa)
   
   
  0.515
Slin_0543
DNA polymerase I (1024 aa)
              0.515
murA
UDP-N-acetylglucosamine1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine (435 aa)
 
          0.508
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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