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Slin_3278 protein (Spirosoma linguale) - STRING interaction network
"Slin_3278" - Hypothetical protein in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3278Hypothetical protein (364 aa)    
Predicted Functional Partners:
mnmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 (458 aa)
              0.679
Slin_5723
TetR family transcriptional regulator (177 aa)
   
          0.649
Slin_4611
Hypothetical protein (735 aa)
   
          0.570
Slin_3277
Beta-lactamase (253 aa)
              0.554
Slin_6416
Hypothetical protein (364 aa)
   
          0.549
Slin_5627
Anthranilate phosphoribosyltransferase-like protein (419 aa)
   
          0.495
Slin_5161
Hypothetical protein (428 aa)
   
          0.480
Slin_2259
Hypothetical protein (299 aa)
   
          0.479
Slin_5991
Peptidase S8/S53 subtilisin kexin sedolisin (1343 aa)
   
          0.461
Slin_6446
Hypothetical protein (270 aa)
   
          0.458
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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