STRINGSTRING
Slin_3291 protein (Spirosoma linguale) - STRING interaction network
"Slin_3291" - Integrase family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3291Integrase family protein (450 aa)    
Predicted Functional Partners:
Slin_3283
Hypothetical protein (121 aa)
   
          0.702
Slin_1970
Hypothetical protein (306 aa)
   
          0.697
Slin_0693
Hypothetical protein (372 aa)
   
          0.662
Slin_3280
Excisionase family DNA binding domain-containing protein (185 aa)
   
          0.654
Slin_2875
Hypothetical protein (843 aa)
   
          0.652
Slin_3158
Hypothetical protein (857 aa)
   
          0.644
Slin_4979
TonB-dependent receptor plug (1188 aa)
   
          0.627
Slin_5074
Hypothetical protein (67 aa)
   
          0.616
Slin_4978
RagB/SusD domain-containing protein (576 aa)
   
          0.603
Slin_1509
Hypothetical protein (172 aa)
   
          0.594
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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