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Slin_3314 protein (Spirosoma linguale) - STRING interaction network
"Slin_3314" - Hypothetical protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3314Hypothetical protein (806 aa)    
Predicted Functional Partners:
Slin_4588
RND family efflux transporter MFP subunit (415 aa)
 
          0.860
Slin_4589
ABC transporter (225 aa)
 
          0.836
Slin_4582
Histidine kinase (455 aa)
 
          0.785
Slin_3315
Hypothetical protein (119 aa)
              0.695
Slin_1201
ABC transporter (228 aa)
 
          0.512
Slin_2352
RND family efflux transporter MFP subunit (419 aa)
   
          0.481
Slin_3313
PadR family transcriptional regulator (119 aa)
              0.450
Slin_5121
ABC transporter (240 aa)
 
          0.418
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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