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Slin_3321 protein (Spirosoma linguale) - STRING interaction network
"Slin_3321" - Short-chain dehydrogenase/reductase SDR in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3321Short-chain dehydrogenase/reductase SDR (351 aa)    
Predicted Functional Partners:
Slin_3322
Cupin (255 aa)
              0.623
Slin_1007
Short-chain dehydrogenase/reductase SDR (233 aa)
   
          0.547
Slin_1835
Peptidase M16 domain-containing protein (949 aa)
   
          0.523
Slin_1834
Peptidase M16 domain-containing protein (934 aa)
   
          0.515
Slin_5261
Glycoside hydrolase family protein (453 aa)
   
          0.469
Slin_3666
Cyclase/dehydrase (284 aa)
   
          0.466
Slin_4161
Glycoside hydrolase family protein (451 aa)
   
          0.458
Slin_4159
FRG domain-containing protein (275 aa)
   
          0.457
Slin_3320
Microtubule-associated protein 1A (94 aa)
              0.441
Slin_3963
Hypothetical protein (223 aa)
   
          0.432
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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