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Slin_3338 protein (Spirosoma linguale) - STRING interaction network
"Slin_3338" - Glycoside hydrolase family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3338Glycoside hydrolase family protein (382 aa)    
Predicted Functional Partners:
Slin_4317
Hypothetical protein (620 aa)
   
          0.698
Slin_1177
Hypothetical protein (214 aa)
   
          0.694
Slin_2472
ASPIC/UnbV domain-containing protein (1172 aa)
   
          0.677
Slin_6381
N-acylglucosamine 2-epimerase (427 aa)
 
          0.644
Slin_4939
Hypothetical protein (360 aa)
   
          0.637
Slin_2260
Hypothetical protein (319 aa)
   
          0.634
Slin_2836
Hypothetical protein (469 aa)
   
          0.623
Slin_3337
Xylose isomerase (287 aa)
              0.618
Slin_0354
Hypothetical protein (725 aa)
   
          0.593
Slin_1976
Conjugative relaxase domain-containing protein (919 aa)
   
          0.580
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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