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Slin_3360 protein (Spirosoma linguale) - STRING interaction network
"Slin_3360" - Glycoside hydrolase family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3360Glycoside hydrolase family protein (522 aa)    
Predicted Functional Partners:
Slin_2035
Hypothetical protein (678 aa)
 
          0.743
Slin_6191
Hypothetical protein (855 aa)
 
          0.666
Slin_1237
alpha-L-arabinofuranosidase (513 aa)
 
   
  0.657
Slin_0353
Xylan 1,4-beta-xylosidase (346 aa)
 
   
  0.634
Slin_3081
alpha-N-arabinofuranosidase (347 aa)
 
     
  0.624
Slin_5420
RagB/SusD domain-containing protein (575 aa)
   
          0.571
Slin_1842
Xylose isomerase (287 aa)
 
          0.558
Slin_0349
Xylose isomerase (443 aa)
 
     
  0.530
Slin_4384
Xylose isomerase (446 aa)
 
     
  0.527
Slin_5419
TonB-dependent receptor plug (1102 aa)
   
          0.516
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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