STRINGSTRING
Slin_3373 protein (Spirosoma linguale) - STRING interaction network
"Slin_3373" - DinB family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3373DinB family protein (181 aa)    
Predicted Functional Partners:
Slin_5796
Hypothetical protein (521 aa)
   
          0.767
Slin_4733
Hypothetical protein (506 aa)
   
          0.752
Slin_2143
AraC family transcriptional regulator (269 aa)
   
          0.717
Slin_2382
Hypothetical protein (498 aa)
   
          0.693
Slin_3038
Hypothetical protein (524 aa)
   
          0.658
Slin_3934
Glycoside hydrolase family protein (576 aa)
   
          0.653
Slin_1416
Glycoside hydrolase family protein (557 aa)
   
          0.637
Slin_4939
Hypothetical protein (360 aa)
   
          0.633
Slin_3374
Peptidase U61 LD-carboxypeptidase A (341 aa)
              0.613
Slin_1913
Hypothetical protein (215 aa)
   
          0.604
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (11%) [HD]