STRINGSTRING
Slin_3393 protein (Spirosoma linguale) - STRING interaction network
"Slin_3393" - alpha-N-arabinofuranosidase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3393alpha-N-arabinofuranosidase (350 aa)    
Predicted Functional Partners:
Slin_2384
Glycoside hydrolase family protein (330 aa)
          0.844
Slin_1237
alpha-L-arabinofuranosidase (513 aa)
 
          0.738
Slin_2035
Hypothetical protein (678 aa)
 
          0.616
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose (496 aa)
 
        0.580
Slin_6431
Glycoside hydrolase family protein (325 aa)
 
          0.562
Slin_1422
Hypothetical protein (760 aa)
 
          0.542
Slin_4720
Hypothetical protein (655 aa)
 
          0.538
Slin_6460
Arabinogalactan endo-1,4-beta-galactosidase (347 aa)
   
          0.526
Slin_3392
Glucose sorbosone dehydrogenase (476 aa)
              0.497
Slin_6190
Glycoside hydrolase family protein (640 aa)
          0.491
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (7%) [HD]