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Slin_3406 protein (Spirosoma linguale) - STRING interaction network
"Slin_3406" - Pseudouridine synthase in Spirosoma linguale
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3406Pseudouridine synthase (244 aa)    
Predicted Functional Partners:
Slin_3405
Hypothetical protein (565 aa)
              0.656
prfB
Hypothetical protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (358 aa)
 
 
  0.540
Slin_3530
Hypothetical protein (248 aa)
 
        0.515
Slin_4420
RNA-binding S4 domain-containing protein (638 aa)
 
 
  0.499
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (682 aa)
   
   
  0.494
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (220 aa)
   
   
  0.493
Slin_2408
Signal peptide peptidase SppA, 67K type (589 aa)
 
        0.479
pheT
phenylalanyl-tRNA synthetase subunit beta (814 aa)
   
   
  0.473
Slin_4152
Cyanophycin synthetase (895 aa)
   
        0.466
Slin_0522
Pseudouridine synthase (198 aa)
 
 
  0.449
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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