STRINGSTRING
Slin_3432 protein (Spirosoma linguale) - STRING interaction network
"Slin_3432" - Xylose isomerase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3432Xylose isomerase (350 aa)    
Predicted Functional Partners:
Slin_3435
Oxidoreductase domain-containing protein (381 aa)
 
   
  0.969
Slin_3436
Oxidoreductase domain-containing protein (378 aa)
 
   
  0.954
Slin_3434
Hypothetical protein (78 aa)
              0.859
Slin_3433
Hypothetical protein (122 aa)
              0.859
Slin_0520
nucleoside-H symporter (404 aa)
 
          0.775
Slin_1107
Oxidoreductase domain-containing protein (360 aa)
 
   
  0.710
Slin_4070
Oxidoreductase domain-containing protein (734 aa)
   
   
  0.702
Slin_0970
Oxidoreductase domain-containing protein (385 aa)
 
   
  0.681
Slin_4072
Oxidoreductase domain-containing protein (365 aa)
 
   
  0.658
Slin_4950
Twin-arginine translocation pathway signal (212 aa)
 
     
  0.647
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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