STRINGSTRING
Slin_3438 protein (Spirosoma linguale) - STRING interaction network
"Slin_3438" - Late embryogenesis abundant protein 2 in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3438Late embryogenesis abundant protein 2 (304 aa)    
Predicted Functional Partners:
Slin_4183
GHMP kinase (347 aa)
   
          0.737
Slin_0892
Hypothetical protein (327 aa)
   
          0.730
Slin_6245
phytanoyl-CoA dioxygenase (320 aa)
   
          0.712
Slin_3439
Hypothetical protein (258 aa)
 
          0.664
Slin_0221
Hypothetical protein (484 aa)
   
          0.645
Slin_3951
RagB/SusD domain-containing protein (491 aa)
   
          0.638
Slin_0775
UDP-glucuronosyl/UDP-glucosyltransferase (444 aa)
   
          0.638
Slin_3859
Polysaccharide biosynthesis protein (461 aa)
   
          0.600
Slin_0358
Coagulation factor 5/8 type domain-containing protein (1114 aa)
   
          0.587
Slin_6352
Hypothetical protein (302 aa)
   
          0.570
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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