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Slin_3460 protein (Spirosoma linguale) - STRING interaction network
"Slin_3460" - Filamentation induced by cAMP protein fic in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3460Filamentation induced by cAMP protein fic (258 aa)    
Predicted Functional Partners:
Slin_3459
Spore coat protein CotH (545 aa)
              0.609
Slin_5131
Hypothetical protein (108 aa)
   
          0.604
Slin_5434
Hypothetical protein (94 aa)
   
          0.563
Slin_3088
Adenine-specific DNA-methyltransferase (502 aa)
 
 
      0.544
Slin_6258
N-6 DNA methylase (787 aa)
 
 
      0.526
Slin_3089
Restriction modification system DNA specificity domain-containing protein (520 aa)
 
     
  0.518
Slin_6432
RagB/SusD domain-containing protein (542 aa)
   
          0.482
Slin_3086
Type I site-specific deoxyribonuclease (813 aa)
 
          0.478
Slin_5624
ATPase AAA (378 aa)
 
          0.430
Slin_0543
DNA polymerase I (1024 aa)
 
      0.429
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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