STRINGSTRING
Slin_3461 protein (Spirosoma linguale) - STRING interaction network
"Slin_3461" - Xylose isomerase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3461Xylose isomerase (293 aa)    
Predicted Functional Partners:
Slin_4694
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (318 aa)
     
 
  0.905
Slin_3462
Hypothetical protein (261 aa)
 
          0.871
Slin_5812
Xylose isomerase (321 aa)
   
   
 
0.855
Slin_4771
Hypothetical protein (268 aa)
 
          0.751
Slin_0520
nucleoside-H symporter (404 aa)
 
          0.690
Slin_6569
Hypothetical protein (238 aa)
   
          0.644
Slin_4950
Twin-arginine translocation pathway signal (212 aa)
 
          0.643
Slin_5725
Hypothetical protein (198 aa)
   
          0.638
Slin_4651
Hypothetical protein (226 aa)
   
          0.637
Slin_3047
Hypothetical protein (242 aa)
   
          0.620
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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