STRINGSTRING
Slin_3493 protein (Spirosoma linguale) - STRING interaction network
"Slin_3493" - Dienelactone hydrolase-like protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3493Dienelactone hydrolase-like protein (433 aa)    
Predicted Functional Partners:
Slin_5930
NHL repeat containing protein (367 aa)
   
          0.623
Slin_2536
Hypothetical protein (741 aa)
   
          0.621
Slin_5453
Hypothetical protein (924 aa)
   
          0.614
Slin_5004
Hypothetical protein (1010 aa)
   
          0.546
Slin_4084
Hypothetical protein (917 aa)
   
          0.543
Slin_1313
Short-chain dehydrogenase/reductase SDR (262 aa)
   
          0.515
Slin_0959
Hypothetical protein (776 aa)
   
          0.509
Slin_0961
Hypothetical protein (729 aa)
   
          0.496
Slin_2915
Hypothetical protein (345 aa)
   
          0.457
Slin_5932
Hypothetical protein (1182 aa)
   
          0.447
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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