STRINGSTRING
Slin_3501 protein (Spirosoma linguale) - STRING interaction network
"Slin_3501" - Cupin in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3501Cupin (184 aa)    
Predicted Functional Partners:
Slin_3503
Cupin (182 aa)
 
          0.758
Slin_3266
Hypothetical protein (983 aa)
   
          0.655
Slin_3363
Cupin (181 aa)
   
          0.590
Slin_3197
Cupin (191 aa)
   
          0.587
Slin_3986
Xylose isomerase (338 aa)
   
          0.568
Slin_3502
AraC family transcriptional regulator (278 aa)
              0.526
Slin_3908
Cupin (186 aa)
   
          0.488
Slin_5988
Hypothetical protein (371 aa)
   
          0.435
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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