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Slin_3524 protein (Spirosoma linguale) - STRING interaction network
"Slin_3524" - Carboxynorspermidine decarboxylase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3524Carboxynorspermidine decarboxylase (386 aa)    
Predicted Functional Partners:
Slin_2087
DNA/RNA non-specific endonuclease (724 aa)
   
 
  0.936
Slin_5152
Protease Do (506 aa)
     
 
    0.934
Slin_2676
HtrA2 peptidase (351 aa)
     
 
    0.934
Slin_1209
Peptidase S1 and S6 chymotrypsin/Hap (337 aa)
     
 
    0.934
Slin_3519
Saccharopine dehydrogenase (405 aa)
 
   
  0.899
Slin_4514
Aspartate kinase (818 aa)
   
 
  0.842
Slin_2566
Chorismate mutase (357 aa)
   
   
  0.688
Slin_5632
Aspartate kinase (441 aa)
   
 
  0.685
Slin_5565
Aspartate kinase (414 aa)
   
 
  0.685
Slin_0458
Ankyrin (161 aa)
     
 
    0.636
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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