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Slin_3543 protein (Spirosoma linguale) - STRING interaction network
"Slin_3543" - UspA domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3543UspA domain-containing protein (293 aa)    
Predicted Functional Partners:
Slin_3544
Hypothetical protein (318 aa)
 
       
0.877
Slin_3545
Hypothetical protein (80 aa)
              0.859
Slin_3542
Hypothetical protein (131 aa)
              0.829
Slin_4196
Glycoside hydrolase (1002 aa)
   
          0.634
Slin_3570
UspA domain-containing protein (271 aa)
   
          0.626
Slin_1252
Cell wall hydrolase/autolysin (347 aa)
   
          0.626
Slin_5392
beta-N-acetylhexosaminidase (953 aa)
   
          0.624
Slin_3922
Hypothetical protein; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (126 aa)
   
          0.622
Slin_5707
Hypothetical protein (100 aa)
   
          0.619
Slin_5875
Hypothetical protein (134 aa)
   
          0.592
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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