STRINGSTRING
Slin_3546 protein (Spirosoma linguale) - STRING interaction network
"Slin_3546" - ErfK/YbiS/YcfS/YnhG family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3546ErfK/YbiS/YcfS/YnhG family protein (378 aa)    
Predicted Functional Partners:
Slin_3544
Hypothetical protein (318 aa)
 
          0.664
Slin_3545
Hypothetical protein (80 aa)
              0.580
Slin_3543
UspA domain-containing protein (293 aa)
              0.580
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Cell wall formation (222 aa)
   
        0.570
Slin_3542
Hypothetical protein (131 aa)
              0.562
Slin_1401
Hypothetical protein (240 aa)
 
          0.501
Slin_3317
Hypothetical protein (284 aa)
   
        0.408
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (7%) [HD]