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Slin_3580 protein (Spirosoma linguale) - STRING interaction network
"Slin_3580" - alpha-L-rhamnosidase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3580alpha-L-rhamnosidase (918 aa)    
Predicted Functional Partners:
Slin_1945
alpha-L-rhamnosidase (819 aa)
 
     
  0.752
Slin_4720
Hypothetical protein (655 aa)
 
          0.731
Slin_4382
L-fucose isomerase-like protein; Catalyzes the conversion of L-arabinose to L-ribulose (498 aa)
   
          0.667
Slin_2687
Glycoside hydrolase (677 aa)
 
          0.651
Slin_3581
Histidine kinase (739 aa)
              0.640
Slin_1912
Periplasmic component of the Tol biopolymer transport system-like protein (512 aa)
   
          0.615
Slin_6560
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose (499 aa)
   
          0.607
Slin_1222
Hypothetical protein (589 aa)
   
          0.593
Slin_6073
Hypothetical protein (474 aa)
          0.587
Slin_1804
Xylose isomerase (424 aa)
 
          0.575
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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