STRINGSTRING
cmk protein (Spirosoma linguale) - STRING interaction network
"cmk" - Cytidylate kinase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmkCytidylate kinase (233 aa)    
Predicted Functional Partners:
Slin_5663
RNA binding S1 domain-containing protein (595 aa)
 
   
  0.955
Slin_0435
Orotidine 5’-phosphate decarboxylase (279 aa)
   
 
    0.938
Slin_2931
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate (405 aa)
   
 
  0.932
Slin_6029
Nucleoside-diphosphate kinase (139 aa)
   
 
  0.921
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (708 aa)
   
 
  0.916
Slin_5127
Phosphoribulokinase/uridine kinase (205 aa)
     
 
  0.913
Slin_6359
Ribonucleoside-diphosphate reductase subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (826 aa)
       
  0.913
Slin_5045
Ribonucleoside-diphosphate reductase (349 aa)
       
  0.912
Slin_5853
Uracil phosphoribosyltransferase (215 aa)
     
 
  0.911
surE
Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5’-monophosphates (258 aa)
   
 
    0.909
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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