STRINGSTRING
Slin_3591 protein (Spirosoma linguale) - STRING interaction network
"Slin_3591" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3591TonB-dependent receptor plug (730 aa)    
Predicted Functional Partners:
Slin_3592
Hypothetical protein (216 aa)
 
     
  0.940
Slin_3544
Hypothetical protein (318 aa)
   
          0.694
Slin_2852
Hypothetical protein (759 aa)
   
          0.668
Slin_4386
Hypothetical protein (156 aa)
   
          0.646
Slin_5238
Hypothetical protein (150 aa)
   
          0.641
Slin_3558
FixH family protein (143 aa)
   
          0.626
Slin_2382
Hypothetical protein (498 aa)
   
          0.606
Slin_3752
Hypothetical protein (490 aa)
   
          0.592
Slin_6187
TonB family protein (472 aa)
   
          0.588
Slin_3590
N-acetyltransferase GCN5 (185 aa)
              0.580
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (6%) [HD]