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Slin_3610 protein (Spirosoma linguale) - STRING interaction network
"Slin_3610" - Peptidoglycan-binding protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3610Peptidoglycan-binding protein (155 aa)    
Predicted Functional Partners:
Slin_3611
Hypothetical protein (106 aa)
            0.924
Slin_2874
Hypothetical protein (115 aa)
   
          0.687
Slin_1221
RagB/SusD domain-containing protein (539 aa)
   
          0.664
Slin_1220
TonB-dependent receptor plug (1137 aa)
   
          0.627
Slin_3609
Hypothetical protein (66 aa)
              0.621
Slin_4046
Phosphoadenosine phosphosulfate reductase (368 aa)
   
          0.590
Slin_5182
Hypothetical protein (315 aa)
   
          0.502
Slin_3901
Proline-specific peptidase (369 aa)
   
          0.484
Slin_3246
AIG2 family protein (122 aa)
   
          0.484
Slin_3608
FeS assembly protein SufB (497 aa)
              0.473
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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