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Slin_3654 protein (Spirosoma linguale) - STRING interaction network
"Slin_3654" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3654TonB-dependent receptor plug (810 aa)    
Predicted Functional Partners:
Slin_2312
Hypothetical protein (526 aa)
   
          0.715
Slin_4782
TonB-dependent receptor (1144 aa)
   
          0.692
Slin_3951
RagB/SusD domain-containing protein (491 aa)
   
          0.687
Slin_4634
Hypothetical protein (288 aa)
   
          0.678
Slin_5798
TonB-dependent receptor plug (1202 aa)
   
          0.650
Slin_4783
RagB/SusD domain-containing protein (548 aa)
   
          0.633
Slin_1309
Hypothetical protein (614 aa)
   
          0.619
Slin_6635
RagB/SusD domain-containing protein (483 aa)
   
          0.609
Slin_6286
TonB-dependent receptor plug (1168 aa)
   
          0.599
Slin_3950
TonB-dependent receptor (996 aa)
   
          0.595
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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