STRINGSTRING
Slin_3666 protein (Spirosoma linguale) - STRING interaction network
"Slin_3666" - Cyclase/dehydrase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3666Cyclase/dehydrase (284 aa)    
Predicted Functional Partners:
Slin_3665
Alcohol dehydrogenase GroES domain-containing protein (388 aa)
 
          0.967
Slin_3669
Alcohol dehydrogenase GroES domain-containing protein (386 aa)
 
          0.688
Slin_2005
Hypothetical protein (192 aa)
 
          0.645
Slin_4200
Alcohol dehydrogenase GroES domain-containing protein (385 aa)
 
          0.612
Slin_3667
Major royal jelly protein (343 aa)
   
        0.612
Slin_4161
Glycoside hydrolase family protein (451 aa)
   
          0.588
Slin_5261
Glycoside hydrolase family protein (453 aa)
   
          0.571
Slin_6249
Hypothetical protein (259 aa)
   
          0.559
Slin_4132
Hypothetical protein (202 aa)
 
          0.510
Slin_3664
Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate (832 aa)
              0.509
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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