STRINGSTRING
Slin_3677 protein (Spirosoma linguale) - STRING interaction network
"Slin_3677" - TetR family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3677TetR family transcriptional regulator (196 aa)    
Predicted Functional Partners:
Slin_4138
TetR family transcriptional regulator (203 aa)
   
          0.748
Slin_3678
Short-chain dehydrogenase/reductase SDR (241 aa)
 
          0.707
Slin_6222
TetR family transcriptional regulator (186 aa)
 
          0.584
Slin_3679
Alpha/beta hydrolase fold protein (282 aa)
              0.472
Slin_3680
Strictosidine synthase (301 aa)
              0.451
Slin_3681
Alcohol dehydrogenase zinc-binding domain-containing protein (333 aa)
              0.445
Slin_3834
Crp/Fnr family transcriptional regulator (191 aa)
   
          0.439
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (10%) [HD]