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Slin_3828 protein (Spirosoma linguale) - STRING interaction network
"Slin_3828" - GAF sensor protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3828GAF sensor protein (226 aa)    
Predicted Functional Partners:
Slin_3829
PAS/PAC sensor signal transduction histidine kinase (475 aa)
          0.908
Slin_5387
Transcriptional regulator (236 aa)
   
 
  0.675
Slin_2508
PAS/PAC sensor hybrid histidine kinase (784 aa)
 
 
  0.657
Slin_0141
Hpt sensor hybrid histidine kinase (778 aa)
            0.643
Slin_6527
LuxR family transcriptional regulator (215 aa)
   
 
  0.588
Slin_6489
LuxR family transcriptional regulator (219 aa)
   
 
  0.588
Slin_6441
LuxR family transcriptional regulator (213 aa)
   
 
  0.588
Slin_5845
LuxR family transcriptional regulator (219 aa)
   
 
  0.588
Slin_5409
LuxR family transcriptional regulator (223 aa)
   
 
  0.588
Slin_0700
LuxR family transcriptional regulator (218 aa)
   
 
  0.588
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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