STRINGSTRING
Slin_3843 protein (Spirosoma linguale) - STRING interaction network
"Slin_3843" - NHL repeat containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3843NHL repeat containing protein (282 aa)    
Predicted Functional Partners:
Slin_2782
ECF subfamily RNA polymerase sigma-24 subunit (414 aa)
   
          0.644
Slin_2781
Hypothetical protein (112 aa)
   
          0.580
Slin_0005
Polymorphic outer membrane protein (775 aa)
   
          0.576
Slin_5981
Hypothetical protein (298 aa)
   
          0.572
Slin_5676
Hypothetical protein (107 aa)
   
          0.563
Slin_0327
Hypothetical protein (743 aa)
   
          0.533
Slin_0619
Polymorphic membrane protein (1216 aa)
   
          0.524
Slin_1445
Hypothetical protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH (159 aa)
   
          0.520
Slin_1448
Cytochrome C biogenesis protein CcmB (224 aa)
   
          0.512
Slin_0951
N-(5 -phosphoribosyl)anthranilate isomerase (211 aa)
   
          0.495
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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