Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
CRISPR-associated protein Cas6 (291 aa)
Predicted Functional Partners:
CRISPR-associated helicase Cas3 (762 aa)
CRISPR-associated protein Cas5 (266 aa)
CRISPR-associated protein TM1801 (307 aa)
DevR family CRISPR-associated autoregulator (299 aa)
Hypothetical protein (487 aa)
Hypothetical protein (489 aa)
Hypothetical protein (531 aa)
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette (351 aa)
Hypothetical protein (538 aa)
TonB-dependent receptor plug (1057 aa)
Your Current Organism:
NCBI taxonomy Id: 504472 Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74