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Slin_3847 protein (Spirosoma linguale) - STRING interaction network
"Slin_3847" - CRISPR-associated protein Cas6 in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3847CRISPR-associated protein Cas6 (291 aa)    
Predicted Functional Partners:
Slin_6018
CRISPR-associated helicase Cas3 (762 aa)
 
          0.754
Slin_3867
CRISPR-associated protein Cas5 (266 aa)
 
          0.732
Slin_3868
CRISPR-associated protein TM1801 (307 aa)
 
          0.698
Slin_6016
DevR family CRISPR-associated autoregulator (299 aa)
 
          0.594
Slin_0202
Hypothetical protein (487 aa)
   
          0.579
Slin_0205
Hypothetical protein (489 aa)
   
          0.544
Slin_3399
Hypothetical protein (531 aa)
   
          0.539
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette (351 aa)
 
          0.508
Slin_0802
Hypothetical protein (538 aa)
   
          0.459
Slin_3400
TonB-dependent receptor plug (1057 aa)
   
          0.445
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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