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Slin_3858 protein (Spirosoma linguale) - STRING interaction network
"Slin_3858" - Lipopolysaccharide biosynthesis protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3858Lipopolysaccharide biosynthesis protein (735 aa)    
Predicted Functional Partners:
Slin_3860
O-antigen polymerase (494 aa)
 
          0.972
Slin_3859
Polysaccharide biosynthesis protein (461 aa)
 
          0.954
Slin_3861
Family 2 glycosyl transferase (397 aa)
 
          0.928
Slin_3853
Family 2 glycosyl transferase (396 aa)
 
          0.905
Slin_3862
Family 2 glycosyl transferase (403 aa)
 
          0.841
Slin_3851
Sugar transferase (395 aa)
 
          0.806
Slin_1027
Family 2 glycosyl transferase (408 aa)
 
          0.779
Slin_3855
Acetyltransferase (isoleucine patch superfamily)-like protein (212 aa)
 
          0.744
Slin_3852
Family 2 glycosyl transferase (321 aa)
 
          0.703
Slin_3857
Hypothetical protein (275 aa)
              0.675
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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