STRINGSTRING
Slin_3868 protein (Spirosoma linguale) - STRING interaction network
"Slin_3868" - CRISPR-associated protein TM1801 in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3868CRISPR-associated protein TM1801 (307 aa)    
Predicted Functional Partners:
Slin_3867
CRISPR-associated protein Cas5 (266 aa)
 
          0.954
Slin_0205
Hypothetical protein (489 aa)
   
          0.757
Slin_0202
Hypothetical protein (487 aa)
   
          0.754
Slin_3869
Hypothetical protein (629 aa)
              0.754
Slin_6432
RagB/SusD domain-containing protein (542 aa)
   
          0.726
Slin_1953
Integrase family protein (405 aa)
   
          0.699
Slin_3847
CRISPR-associated protein Cas6 (291 aa)
 
          0.698
Slin_1642
Type 3a cellulose-binding domain-containing protein (658 aa)
   
          0.693
Slin_5403
Hypothetical protein (519 aa)
   
          0.688
Slin_0203
TonB-dependent receptor plug (1047 aa)
   
          0.645
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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