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Slin_3923 protein (Spirosoma linguale) - STRING interaction network
"Slin_3923" - Carboxyl-terminal protease in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3923Carboxyl-terminal protease (557 aa)    
Predicted Functional Partners:
Slin_3922
Hypothetical protein; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (126 aa)
 
          0.753
Slin_1779
Peptidase M23 (354 aa)
 
 
  0.691
Slin_0806
PpiC-type peptidyl-prolyl cis-trans isomerase (458 aa)
 
   
  0.655
Slin_0978
Peptidase M23 (689 aa)
 
 
  0.610
Slin_1641
Peptidase M23 (286 aa)
 
 
  0.587
Slin_6234
Peptidase M23 (446 aa)
 
 
  0.553
Slin_5448
Phospholipid/glycerol acyltransferase (241 aa)
 
        0.550
Slin_2087
DNA/RNA non-specific endonuclease (724 aa)
   
   
  0.545
Slin_5152
Protease Do (506 aa)
   
   
  0.530
Slin_2676
HtrA2 peptidase (351 aa)
   
   
  0.530
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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