STRINGSTRING
Slin_3935 protein (Spirosoma linguale) - STRING interaction network
"Slin_3935" - PA-phosphatase-like phosphoesterase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3935PA-phosphatase-like phosphoesterase (276 aa)    
Predicted Functional Partners:
Slin_3934
Glycoside hydrolase family protein (576 aa)
              0.646
Slin_2373
Hypothetical protein (619 aa)
   
          0.572
Slin_1702
TonB-dependent receptor plug (1016 aa)
   
          0.546
Slin_3819
Hypothetical protein (136 aa)
   
          0.541
Slin_1703
Lipoprotein (442 aa)
   
          0.541
Slin_3936
ArsR family transcriptional regulator (109 aa)
              0.502
Slin_1226
Hypothetical protein (371 aa)
   
          0.469
Slin_3933
DNA topology modulation protein (181 aa)
              0.418
Slin_1280
Penicillin-binding protein transpeptidase (1323 aa)
   
          0.416
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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