STRINGSTRING
Slin_3956 protein (Spirosoma linguale) - STRING interaction network
"Slin_3956" - Major facilitator superfamily protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3956Major facilitator superfamily protein (449 aa)    
Predicted Functional Partners:
Slin_3955
2-dehydro-3-deoxyphosphogluconate aldolase (215 aa)
         
  0.669
Slin_3957
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein (332 aa)
              0.662
Slin_4786
Glucuronate isomerase (477 aa)
   
   
  0.565
Slin_1060
Glucuronate isomerase (470 aa)
   
   
  0.565
Slin_3954
2-keto-3-deoxy-galactonokinase (334 aa)
 
          0.523
Slin_2628
GntR family transcriptional regulator (234 aa)
 
        0.497
Slin_1556
Major facilitator superfamily protein (432 aa)
 
          0.471
Slin_1247
Mannitol dehydrogenase domain-containing protein (525 aa)
   
   
  0.440
Slin_1056
Mannitol dehydrogenase domain-containing protein (513 aa)
   
   
  0.440
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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