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Slin_3964 protein (Spirosoma linguale) - STRING interaction network
"Slin_3964" - Pyridoxal phosphate-dependent enzyme in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3964Pyridoxal phosphate-dependent enzyme (407 aa)    
Predicted Functional Partners:
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP (359 aa)
       
  0.943
Slin_3965
Amidohydrolase (414 aa)
 
        0.933
Slin_5630
seryl-tRNA synthetase (423 aa)
     
 
  0.911
Slin_3969
Amidohydrolase (427 aa)
 
        0.874
Slin_3963
Hypothetical protein (223 aa)
 
          0.849
Slin_3968
L-seryl-tRNA(ser) selenium transferase protein (406 aa)
 
   
 
0.847
Slin_6067
Demethylmenaquinone methyltransferase (311 aa)
 
          0.784
Slin_6068
Demethylmenaquinone methyltransferase (312 aa)
 
          0.777
Slin_3967
Endoribonuclease L-PSP (156 aa)
 
          0.747
Slin_6192
Demethylmenaquinone methyltransferase-like protein (314 aa)
   
          0.742
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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